Set (sub-set) # in sub-set ERGO ID b-number gene name "Gerdes et al, 2003" PEC collection Blattner et al. SWISS-PROT FUNCTIONAL DESCRIPTION "Set A: genes consistently essential between Gerdes et al., 2002 and PEC data (viable gene knockouts from UW data are shown in the sub-set A1)" A1 1 REC04815 b1204 pth E E N Peptidyl-tRNA hydrolase (EC 3.1.1.29) A1 2 REC05684 b2828 lgt E E N Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) A1 3 REC02989 b3066 dnaG E E N DNA primase (EC 2.7.7.-) A1 4 REC05932 b3306 rpsH E E N 30S ribosomal protein S8 A1 5 REC06031 b3463 ftsE E E N Cell division ATP-binding protein ftsE A1 6 REC06080 b3560 glyQ E E N Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) A1 7 REC03559 b3639 dfp E E N DNA/pantothenate metabolism flavoprotein A1 8 REC05018 b1637 tyrS E E N Tyrosyl-tRNA synthetase (EC 6.1.1.1) A1 9 REC05063 b1719 thrS E E N Threonyl-tRNA synthetase (EC 6.1.1.3) A1 10 REC05174 b1912 pgsA E E N CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) A1 11 REC05355 b2231 gyrA E E N DNA gyrase subunit A (EC 5.99.1.3) A1 12 REC05516 b2515 ispG* E E N 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (gcpE) A1 13 REC05552 b2566 era E E N GTP-binding protein era A1 14 REC05554 b2568 lepB E E N Signal peptidase I (EC 3.4.21.89) A1 15 REC05600 b2697 alaS E E N Alanyl-tRNA synthetase (EC 6.1.1.7) A1 16 REC05733 b2925 fbaA E E N Fructose-bisphosphate aldolase class II (EC 4.1.2.13) A2 1 REC06566 b0026 ileS E E X Isoleucyl-tRNA synthetase (EC 6.1.1.5) A2 2 REC00027 b0027 lspA E E X Lipoprotein signal peptidase (EC 3.4.23.36) A2 3 REC00029 b0029 ispH* E E X IspH protein (lytB) A2 4 REC00083 b0083 ftsL E E X Cell division protein ftsL A2 5 REC00084 b0084 ftsI E E X Peptidoglycan synthetase ftsI precursor A2 6 REC00085 b0085 murE E E X "UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)" A2 7 REC00088 b0088 murD E E X UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) A2 8 REC00089 b0089 ftsW E E X Cell division protein ftsW A2 9 REC00090 b0090 murG E E X UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.-) A2 10 REC00091 b0091 murC E E X UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) A2 11 REC00093 b0093 ftsQ E E X Cell division protein ftsQ A2 12 REC00094 b0094 ftsA E E X Cell division protein ftsA A2 13 REC00095 b0095 ftsZ E E X Cell division protein ftsZ A2 14 REC00098 b0098 secA E E X Preprotein translocase secA subunit A2 15 REC04364 b0168 map E E X Methionine aminopeptidase (EC 3.4.11.18) A2 16 REC00169 b0169 rpsB E E X 30S ribosomal protein S2 A2 17 REC00171 b0171 pyrH E E X Uridylate kinase (EC 2.7.4.-) A2 18 REC00172 b0172 frr E E X Ribosome recycling factor A2 19 REC00174 b0174 uppS E E X Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) A2 20 REC00175 b0175 cdsA E E X Phosphatidate cytidylyltransferase (EC 2.7.7.41) A2 21 REC00180 b0180 fabZ E E X (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-) A2 22 REC00181 b0181 lpxA E E X Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) A2 23 REC00182 b0182 lpxB E E X Lipid-A-disaccharide synthase (EC 2.4.1.182) A2 24 REC00184 b0184 dnaE E E X DNA polymerase III alpha subunit (EC 2.7.7.7) A2 25 REC00185 b0185 accA E E X Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC 6.4.1.2) A2 26 REC04367 b0194 proS E E X Prolyl-tRNA synthetase (EC 6.1.1.15) A2 27 REC00400 b0416 nusB E E X N utilization substance protein B A2 28 REC04462 b0420 dxs E E X 1-deoxy-D-xylulose 5-phosphate synthase (EC 4.1.3.37) A2 29 REC04463 b0421 ispA E E X Geranyltranstransferase (EC 2.5.1.10) A2 30 REC00453 b0470 dnaX E E X DNA polymerase III subunit tau (EC 2.7.7.7) A2 31 REC00457 b0474 adk E E X Adenylate kinase (EC 2.7.4.3) A2 32 REC00509 b0526 cysS E E X Cysteinyl-tRNA synthetase (EC 6.1.1.16) A2 33 REC04561 b0634 mrdB E E X Rod shape-determining protein rodA A2 34 REC04562 b0635 mrdA E E X Penicillin-binding protein 2 A2 35 REC04567 b0640 holA E E X "DNA polymerase III, delta subunit (EC 2.7.7.7)" A2 36 REC04569 b0642 leuS E E X Leucyl-tRNA synthetase (EC 6.1.1.4) A2 37 REC00654 b0680 glnS E E X Glutaminyl-tRNA synthetase (EC 6.1.1.18) A2 38 REC00859 b0893 serS E E X Seryl-tRNA synthetase (EC 6.1.1.11) A2 39 REC00880 b0914 msbA E E X Probable transport ATP-binding protein msbA A2 40 REC00884 b0918 kdsB E E X 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) A2 41 REC04692 b0930 asnS E E X Asparaginyl-tRNA synthetase (EC 6.1.1.22) A2 42 REC04700 b0954 fabA E E X 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) A2 43 REC04762 b1084 rne E E X Ribonuclease E (EC 3.1.4.-) A2 44 REC01054 b1092 fabD E E X Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) A2 45 REC01055 b1093 fabG E E X 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) A2 46 REC01060 b1098 tmk E E X Thymidylate kinase (EC 2.7.4.9) A2 47 REC01061 b1099 holB E E X "DNA polymerase III, delta' subunit (EC 2.7.7.7)" A2 48 REC01078 b1116 lolC E E X Lipoprotein releasing system transmembrane protein lolC A2 49 REC01079 b1117 lolD E E X Lipoprotein releasing system ATP-binding protein lolD A2 50 REC01080 b1118 lolE E E X Lipoprotein releasing system transmembrane protein lolE A2 51 REC04780 b1133 trmU E E X tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) A2 52 REC04817 b1207 prsA E E X Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) A2 53 REC01234 b1274 topA E E X DNA topoisomerase I (EC 5.99.1.2) A2 54 REC04856 b1288 fabI E E X Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) A2 55 REC05058 b1714 pheS E E X Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) A2 56 REC05060 b1716 rplT E E X 50S ribosomal protein L20 A2 57 REC05062 b1718 infC E E X Translation initiation factor IF-3 A2 58 REC01697 b1740 nadE E E X NH(3)-dependent NAD(+) synthetase (EC 6.3.5.1) A2 59 REC05144 b1866 aspS E E X Aspartyl-tRNA synthetase (EC 6.1.1.12) A2 60 REC01833 b1876 argS E E X Arginyl-tRNA synthetase (EC 6.1.1.19) A2 61 REC02134 b2185 rplY E E X 50S ribosomal protein L25 A2 62 REC06544 b2234 nrdA E E X Ribonucleoside-diphosphate reductase 1 alpha chain (EC 1.17.4.1) A2 63 REC02184 b2235 nrdB E E X Ribonucleoside-diphosphate reductase 1 beta chain (EC 1.17.4.1) A2 64 REC05416 b2323 fabB E E X 3-oxoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41) A2 65 REC05459 b2400 gltX E E X Glutamyl-tRNA synthetase (EC 6.1.1.17) A2 66 REC05464 b2411 ligA E E X DNA ligase (EC 6.5.1.2) A2 67 REC05465 b2412 zipA E E X Cell division protein zipA A2 68 REC05505 b2496 yfgE E E X Hypothetical protein yfgE A2 69 REC05515 b2514 hisS E E X Histidyl-tRNA synthetase (EC 6.1.1.21) A2 70 REC05549 b2563 acpS E E X Holo-[acyl-carrier protein] synthase (EC 2.7.8.7) A2 71 REC05570 b2606 rplS E E X 50S ribosomal protein L19 A2 72 REC05571 b2607 trmD E E X tRNA (Guanine-N(1)-)-methyltransferase (EC 2.1.1.31) A2 73 REC05573 b2609 rpsP E E X 30S ribosomal protein S16 A2 74 REC05574 b2610 ffh E E X Signal recognition particle protein A2 75 REC05575 b2614 grpE E E X GrpE protein A2 76 REC05792 b3018 plsC E E X 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) A2 77 REC05793 b3019 parC E E X Topoisomerase IV subunit A (EC 5.99.1.-) A2 78 REC05800 b3030 parE E E X Topoisomerase IV subunit B (EC 5.99.1.-) A2 79 REC05806 b3041 ribB E E X "3,4-dihydroxy-2-butanone 4-phosphate synthase" A2 80 REC02990 b3067 rpoD E E X RNA polymerase sigma factor rpoD A2 81 REC05854 b3165 rpsO E E X 30S ribosomal protein S15 A2 82 REC05867 b3183 yhbZ E E X Hypothetical GTP-binding protein yhbZ A2 83 REC05891 b3230 rpsI E E X 30S ribosomal protein S9 A2 84 REC05892 b3231 rplM E E X 50S ribosomal protein L13 A2 85 REC03205 b3287 def E E X Peptide deformylase (EC 3.5.1.88) A2 86 REC05924 b3298 rpsM E E X 30S ribosomal protein S13 A2 87 REC05926 b3300 secY E E X Preprotein translocase secY subunit A2 88 REC05927 b3301 rplO E E X 50S ribosomal protein L15 A2 89 REC05929 b3303 rpsE E E X 30S ribosomal protein S5 A2 90 REC05930 b3304 rplR E E X 50S ribosomal protein L18 A2 91 REC05931 b3305 rplF E E X 50S ribosomal protein L6 A2 92 REC05933 b3307 rpsN E E X 30S ribosomal protein S14 A2 93 REC05935 b3309 rplX E E X 50S ribosomal protein L24 A2 94 REC05936 b3310 rplN E E X 50S ribosomal protein L14 A2 95 REC05937 b3311 rpsQ E E X 30S ribosomal protein S17 A2 96 REC05942 b3316 rpsS E E X 30S ribosomal protein S19 A2 97 REC05943 b3317 rplB E E X 50S ribosomal protein L2 A2 98 REC05944 b3318 rplW E E X 50S ribosomal protein L23 A2 99 REC05945 b3319 rplD E E X 50S ribosomal protein L4 A2 100 REC05946 b3320 rplC E E X 50S ribosomal protein L3 A2 101 REC05947 b3321 rpsJ E E X 30S ribosomal protein S10 A2 102 REC05954 b3340 fusA E E X Elongation factor G A2 103 REC05956 b3342 rpsL E E X 30S ribosomal protein S12 A2 104 REC05979 b3384 trpS E E X Tryptophanyl-tRNA synthetase (EC 6.1.1.2) A2 105 REC06032 b3464 ftsY E E X Cell division protein ftsY A2 106 REC06079 b3559 glyS E E X Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) A2 107 REC03553 b3633 kdtA E E X 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) A2 108 REC03554 b3634 coaD E E X Phosphopantetheine adenylyltransferase (EC 2.7.7.3) A2 109 REC03560 b3640 dut E E X Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) A2 110 REC03568 b3648 gmk E E X Guanylate kinase (EC 2.7.4.8) A2 111 REC06549 b3702 dnaA E E X Chromosomal replication initiator protein dnaA A2 112 REC06172 b3730 glmU E E X Bifunctional glmU protein A2 113 REC06219 b3865 engB E E X Probable GTP-binding protein engB A2 114 REC03865 b3967 murI E E X Glutamate racemase (EC 5.1.1.3) A2 115 REC03875 b3985 rplJ E E X 50S ribosomal protein L10 A2 116 REC03876 b3986 rplL E E X 50S ribosomal protein L7/L12 A2 117 REC03877 b3987 rpoB E E X DNA-directed RNA polymerase beta chain (EC 2.7.7.6) A2 118 REC06616 b3988 rpoC E E X DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) A2 119 REC03938 b4052 dnaB E E X Replicative DNA helicase (EC 3.6.1.-) A2 120 REC04028 b4142 groS E E X 10 kDa chaperonin A2 121 REC04029 b4143 groL E E X 60 kDa chaperonin A2 122 REC04033 b4147 efp E E X Elongation factor P A2 123 REC04083 b4200 rpsF E E X 30S ribosomal protein S6 A2 124 REC06383 b4226 ppa E E X Inorganic pyrophosphatase (EC 3.6.1.1) A2 125 REC06399 b4258 valS E E X Valyl-tRNA synthetase (EC 6.1.1.9) A2 126 REC06463 b4361 dnaC E E X DNA replication protein dnaC A2 127 REC06464 b4362 dnaT E E X Primosomal protein I "Set B: genes essential in Gerdes et al., 2002 but non-essential in PEC data (viable gene knockouts from UW data are shownin the sub-set B1)" B1 1 REC04363 b0167 glnD E N N [Protein-PII] uridylyltransferase (EC 2.7.7.59) B1 2 REC00209 b0215 dnaQ E N N "DNA polymerase III, epsilon chain (EC 2.7.7.7)" B1 3 REC00261 b0270 yagG E N N Hypothetical symporter yagG B1 4 REC04411 b0285 yagS E N N "Putative xanthine dehydrogenase yagS, FAD binding subunit (EC 1.1.1.204)" B1 5 REC00304 b0320 yahF E N N Hypothetical protein yahF B1 6 REC04469 b0429 cyoD E N N Cytochrome O ubiquinol oxidase protein cyoD B1 7 REC00452 b0469 apt E N N Adenine phosphoribosyltransferase (EC 2.4.2.7) B1 8 REC04537 b0592 fepB E N N Ferrienterobactin-binding periplasmic protein precursor B1 9 REC04574 b0652 gltL E N N Glutamate/aspartate transport ATP-binding protein gltL B1 10 REC00707 b0733 cydA E N N Cytochrome D ubiquinol oxidase subunit I (EC 1.10.3.-) B1 11 REC04641 b0810 glnP E N N Glutamine transport system permease protein glnP B1 12 REC00890 b0924 mukB E N N Cell division protein mukB B1 13 REC00937 b0972 hyaA E N N Hydrogenase-1 small chain precursor (EC 1.18.99.1) B1 14 REC00939 b0974 hyaC E N N Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit B1 15 REC00940 b0975 hyaD E N N Hydrogenase 1 maturation protease (EC 3.4.24.-) B1 16 REC04771 b1123 potD E N N Spermidine/putrescine-binding periplasmic protein precursor B1 17 REC04827 b1237 hns E N N DNA-binding protein H-NS B1 18 REC01206 b1246 oppD E N N Oligopeptide transport ATP-binding protein oppD B1 19 REC01241 b1281 pyrF E N N Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) B1 20 REC01266 b1306 pspC E N N Phage shock protein C B1 21 REC01268 b1308 pspE E N N Phage shock protein E precursor B1 22 REC01381 b1421 trg E N N Methyl-accepting chemotaxis protein III B1 23 REC01387 b1427 rimL E N N Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) B1 24 REC01491 b1531 marA E N N Multiple antibiotic resistance protein marA B1 25 REC01494 b1534 ydeE E N N Hypothetical protein ydeE B1 26 REC04991 b1563 relE E N N Hypothetical relE protein B1 27 REC01568 b1609 rstB E N N Sensor protein rstB (EC 2.7.3.-) B1 28 REC01569 b1610 tus E N N DNA replication terminus site-binding protein B1 29 REC05013 b1618 uidR E N N Uid operon repressor B1 30 REC05049 b1702 ppsA E N N Phosphoenolpyruvate synthase (EC 2.7.9.2) B1 31 REC01661 b1704 aroH E N N "Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive (EC 4.1.2.15)" B1 32 REC05073 b1738 celA E N N "PTS system, cellobiose-specific IIB component (EC 2.7.1.69)" B1 33 REC05086 b1764 selD E N N "Selenide,water dikinase (EC 2.7.9.3)" B1 34 REC05141 b1863 ruvC E N N Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) B1 35 REC05155 b1884 cheR E N N Chemotaxis protein methyltransferase (EC 2.1.1.80) B1 36 REC05158 b1887 cheW E N N Chemotaxis protein cheW B1 37 REC05161 b1890 motA E N N Chemotaxis motA protein B1 38 REC05170 b1900 araG E N N L-arabinose transport ATP-binding protein araG B1 39 REC05171 b1901 araF E N N L-arabinose-binding periplasmic protein precursor B1 40 REC05237 b2042 galF E N N UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) B1 41 REC05271 b2091 gatD E N N Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) B1 42 REC02062 b2114 metG E N N Methionyl-tRNA synthetase (EC 6.1.1.10) B1 43 REC05306 b2150 mglB E N N D-galactose-binding periplasmic protein precursor B1 44 REC05407 b2313 cvpA E N N Colicin V production protein B1 45 REC05468 b2423 cysW E N N Sulfate transport system permease protein cysW B1 46 REC02419 b2479 gcvR E N N Glycine cleavage system transcriptional repressor B1 47 REC05519 b2518 ndk E N N Nucleoside diphosphate kinase (EC 2.7.4.6) B1 48 REC05553 b2567 rnc E N N Ribonuclease III (EC 3.1.26.3) B1 49 REC05610 b2717 hycI E N N Hydrogenase 3 maturation protease (EC 3.4.-.-) B1 50 REC05613 b2720 hycF E N N Formate hydrogenlyase subunit 6 B1 51 REC05734 b2926 pgk E N N Phosphoglycerate kinase (EC 2.7.2.3) B1 52 REC06542 b2935 tktA E N N Transketolase 1 (EC 2.2.1.1) B1 53 REC05776 b2993 hybD E N N Hydrogenase 2 maturation protease (EC 3.4.24.-) B1 54 REC03044 b3119 tdcR E N N Threonine dehydratase operon activator protein B1 55 REC05853 b3164 pnp E N N Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) B1 56 REC03157 b3234 degQ E N N Protease degQ precursor (EC 3.4.21.-) B1 57 REC05981 b3386 rpe E N N Ribulose-phosphate 3-epimerase (EC 5.1.3.1) B1 58 REC03419 b3500 gor E N N Glutathione reductase (EC 1.6.4.2) B1 59 REC06097 b3607 cysE E N N Serine acetyltransferase (EC 2.3.1.30) B1 60 REC06550 b3706 trmE E N N Probable tRNA modification GTPase trmE B1 61 REC06173 b3731 atpC E N N ATP synthase epsilon chain (EC 3.6.3.14) B1 62 REC06178 b3736 atpF E N N ATP synthase B chain (EC 3.6.3.14) B1 63 REC03688 b3778 rep E N N ATP-dependent DNA helicase rep (EC 3.6.1.-) B1 64 REC06581 b3816 corA E N N Magnesium and cobalt transport protein corA B1 65 REC03940 b4054 tyrB E N N Aromatic-amino-acid aminotransferase (EC 2.6.1.57) B1 66 REC06360 b4151 frdD E N N Fumarate reductase 13 kDa hydrophobic protein B1 67 REC04308 b0058 rluA E N N Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) B1 68 REC00710 b0736 ybgC E N N Protein ybgC B1 69 REC04633 b0798 ybiA E N N Hypothetical protein ybiA B1 70 REC04799 b1175 minD E N N Septum site-determining protein minD B1 71 REC04835 b1253 yciA E N N Putative acyl-CoA thioester hydrolase yciA (EC 3.1.2.-) B1 72 REC04928 b1477 yddM E N N Hypothetical protein yddM B1 73 REC05054 b1710 btuE E N N Vitamin B12 transport periplasmic protein btuE B1 74 REC01710 b1753 ynjA E N N Hypothetical protein ynjA B1 75 REC05135 b1852 zwf E N N Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) B1 76 REC05195 b1961 dcm E N N DNA-cytosine methyltransferase (EC 2.1.1.73) B1 77 REC05330 b2197 ccmE E N N Cytochrome c-type biogenesis protein ccmE B1 78 REC05405 b2311 ubiX E N N 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) B1 79 REC05541 b2551 glyA E N N Serine hydroxymethyltransferase (EC 2.1.2.1) B1 80 REC05567 b2594 rluD E N N Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) B1 81 REC05683 b2827 thyA E N N Thymidylate synthase (EC 2.1.1.45) B1 82 REC05723 b2907 ubiH E N N 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-) B1 83 REC05750 b2957 ansB E N N L-asparaginase II precursor (EC 3.5.1.1) B1 84 REC05773 b2990 hybG E N N Hydrogenase-2 operon protein hybG B1 85 REC03125 b3202 rpoN E N N RNA polymerase sigma-54 factor B1 86 REC03127 b3204 ptsN E N N Nitrogen regulatory IIA protein (EC 2.7.1.69) B1 87 REC03160 b3237 argR E N N Arginine repressor B1 88 REC03760 b3860 dsbA E N N Thiol:disulfide interchange protein dsbA precursor B1 89 REC06240 b3902 rhaD E N N Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) B1 90 REC03856 b3958 argC E N N N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) B1 91 REC03916 b4030 yjbA E N N Hypothetical protein yjbA B2 1 REC04745 b1051 msyB E N X Acidic protein msyB B2 2 REC05143 b1865 nudB E N X dATP pyrophosphohydrolase (EC 3.6.1.-) B2 3 REC06532 b4373 rimI E N X Ribosomal-protein-alanine acetyltransferase (EC 2.3.1.128) B2 4 REC00009 b0009 mog E N X Molybdopterin biosynthesis mog protein B2 5 REC00014 b0014 dnaK E N X Chaperone protein dnaK B2 6 REC04295 b0023 rpsT E N X 30S ribosomal protein S20 B2 7 REC00025 b0025 ribF E N X Riboflavin biosynthesis protein ribF B2 8 REC00031 b0031 dapB E N X Dihydrodipicolinate reductase (EC 1.3.1.26) B2 9 REC00048 b0048 folA E N X Dihydrofolate reductase (EC 1.5.1.3) B2 10 REC00092 b0092 ddlB E N X D-alanine--D-alanine ligase B (EC 6.3.2.4) B2 11 REC00115 b0115 aceF E N X Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) B2 12 REC00116 b0116 lpdA E N X Dihydrolipoamide dehydrogenase (EC 1.8.1.4) B2 13 REC00129 b0129 yadI E N X Putative PTS system IIA component yadI (EC 2.7.1.69) B2 14 REC04349 b0142 folK E N X 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) B2 15 REC04355 b0154 hemL E N X "Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)" B2 16 REC04358 b0159 mtn E N X MTA/SAH nucleosidase B2 17 REC04362 b0166 dapD E N X "2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (EC 2.3.1.117)" B2 18 REC00173 b0173 dxr E N X 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) B2 19 REC00183 b0183 rnhB E N X Ribonuclease HII (EC 3.1.26.4) B2 20 REC04376 b0214 rnhA E N X Ribonuclease HI (EC 3.1.26.4) B2 21 REC04399 b0265 E N X Insertion element IS1 1/2/3/5/6 protein insA B2 22 REC00262 b0271 yagH E N X Putative beta-xylosidase (EC 3.2.1.37) B2 23 REC04413 b0289 yagV E N X Hypothetical protein yagV precursor B2 24 REC00306 b0322 yahH E N X Hypothetical protein yahH B2 25 REC00324 b0340 cynS E N X Cyanate hydratase (EC 4.2.1.104) B2 26 REC04446 b0369 hemB E N X Delta-aminolevulinic acid dehydratase (EC 4.2.1.24) B2 27 REC04453 b0386 proC E N X Pyrroline-5-carboxylate reductase (EC 1.5.1.2) B2 28 REC00392 b0408 secD E N X Protein-export membrane protein secD B2 29 REC00393 b0409 secF E N X Protein-export membrane protein secF B2 30 REC00398 b0414 ribD E N X Riboflavin biosynthesis protein ribD B2 31 REC00399 b0415 ribH E N X "6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)" B2 32 REC00402 b0418 pgpA E N X Phosphatidylglycerophosphatase A (EC 3.1.3.27) B2 33 REC04487 b0467 priC E N X "Primosomal replication protein N""" B2 34 REC00458 b0475 hemH E N X Ferrochelatase (EC 4.99.1.1) B2 35 REC00488 b0505 allA E N X Ureidoglycolate hydrolase (EC 3.5.3.19) B2 36 REC04508 b0525 ppiB E N X Peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) B2 37 REC00532 b0550 rusA E N X Crossover junction endodeoxyribonuclease rusA (EC 3.1.22.-) B2 38 REC00545 b0564 appY E N X AppY protein B2 39 REC04568 b0641 rlpB E N X Rare lipoprotein B precursor B2 40 REC04575 b0653 gltK E N X Glutamate/aspartate transport system permease protein gltK B2 41 REC00661 b0687 seqA E N X SeqA protein B2 42 REC00676 b0702 ybfB E N X Hypothetical protein ybfB B2 43 REC00678 b0704 ybfC E N X Hypothetical protein ybfC precursor B2 44 REC00682 b0708 phrB E N X Deoxyribodipyrimidine photolyase (EC 4.1.99.3) B2 45 REC04605 b0717 ybgP E N X Hypothetical fimbrial chaperone ybgP precursor B2 46 REC00700 b0726 sucA E N X 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) B2 47 REC00701 b0727 sucB E N X Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) B2 48 REC00708 b0734 cydB E N X Cytochrome D ubiquinol oxidase subunit II (EC 1.10.3.-) B2 49 REC04619 b0766 ybhA E N X Hypothetical protein ybhA B2 50 REC04625 b0788 ybhN E N X Hypothetical protein ybhN B2 51 REC00758 b0791 ybhQ E N X Hypothetical protein ybhQ B2 52 REC04653 b0835 yliG E N X Hypothetical protein yliG B2 53 REC04680 b0886 cydC E N X Transport ATP-binding protein cydC B2 54 REC04681 b0887 cydD E N X Transport ATP-binding protein cydD B2 55 REC00888 b0922 mukF E N X MukF protein B2 56 REC00889 b0923 mukE E N X MukE protein B2 57 REC00953 b0988 insB4 E N X Insertion element IS1 4 protein insB B2 58 REC04721 b0995 torR E N X TorCAD operon transcriptional regulatory protein torR B2 59 REC00961 b0998 torD E N X Chaperone protein torD B2 60 REC04742 b1039 csgE E N X Curli production assembly/transport component csgE precursor B2 61 REC01053 b1091 fabH E N X 3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41) B2 62 REC04772 b1124 potC E N X Spermidine/putrescine transport system permease protein potC B2 63 REC01151 b1189 dadA E N X D-amino acid dehydrogenase small subunit (EC 1.4.99.1) B2 64 REC04814 b1203 ychF E N X Probable GTP-binding protein ychF B2 65 REC01174 b1212 hemK E N X Protein methyltranferase hemK (EC 2.1.1.-) B2 66 REC04825 b1232 purU E N X Formyltetrahydrofolate deformylase (EC 3.5.1.10) B2 67 REC01195 b1235 hnr E N X Hnr protein B2 68 REC01196 b1236 galU E N X UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) B2 69 REC01198 b1238 tdk E N X Thymidine kinase (EC 2.7.1.21) B2 70 REC01205 b1245 oppC E N X Oligopeptide transport system permease protein oppC B2 71 REC01212 b1252 tonB E N X TonB protein B2 72 REC04836 b1254 ispZ E N X Probable intracellular septation protein B2 73 REC01229 b1269 yciL E N X Hypothetical protein yciL B2 74 REC04847 b1270 btuR E N X COB(I)alamin adenosyltransferase (EC 2.5.1.17) B2 75 REC04848 b1271 yciK E N X Hypothetical oxidoreductase yciK (EC 1.-.-.-) B2 76 REC04850 b1277 ribA E N X GTP cyclohydrolase II (EC 3.5.4.25) B2 77 REC04869 b1326 ycjI E N X Hypothetical protein ycjI B2 78 REC01292 b1332 ynaJ E N X Hypothetical protein ynaJ B2 79 REC01300 b1340 ydaL E N X Hypothetical protein ydaL B2 80 REC04889 b1356 racR E N X Rac prophage repressor B2 81 REC01317 b1357 ydaS E N X Hypothetical protein ydaS precursor B2 82 REC01318 b1358 ydaT E N X Hypothetical protein ydaT B2 83 REC01319 b1359 ydaU E N X Hypothetical protein ydaU B2 84 REC04890 b1370 insH5 E N X Transposase insH for insertion sequence element IS5Y B2 85 REC04896 b1379 hslJ E N X Heat shock protein hslJ B2 86 REC01350 b1390 paaC E N X Phenylacetic acid degradation protein paaC B2 87 REC04903 b1412 acpD E N X Acyl carrier protein phosphodiesterase (EC 3.1.4.14) B2 88 REC01394 b1434 ydcN E N X Hypothetical protein ydcN B2 89 REC04918 b1464 yddE E N X Hypothetical protein yddE B2 90 REC01530 b1570 dicA E N X Repressor protein of division inhibition gene dicB B2 91 REC01573 b1614 ydgA E N X Hypothetical protein ydgA B2 92 REC01593 b1634 ydgR E N X Hypothetical transporter ydgR B2 93 REC01610 b1651 gloA E N X Lactoylglutathione lyase (EC 4.4.1.5) B2 94 REC01611 b1652 rnt E N X Ribonuclease T (EC 3.1.13.-) B2 95 REC05029 b1662 ribE E N X Riboflavin synthase alpha chain (EC 2.5.1.9) B2 96 REC05071 b1736 celC E N X "PTS system, cellobiose-specific IIA component (EC 2.7.1.69)" B2 97 REC05087 b1765 ydjA E N X Protein ydjA B2 98 REC01736 b1779 gapA E N X Glyceraldehyde 3-phosphate dehydrogenase A (EC 1.2.1.12) B2 99 REC05147 b1874 cutC E N X Copper homeostasis protein cutC B2 100 REC01896 b1942 fliJ E N X Flagellar fliJ protein B2 101 REC01898 b1944 fliL E N X Flagellar fliL protein B2 102 REC01900 b1946 fliN E N X Flagellar motor switch protein fliN B2 103 REC05256 b2061 wzb E N X Low molecular weight protein-tyrosine-phosphatase wzb (EC 3.1.3.48) B2 104 REC05282 b2105 yohL E N X Hypothetical protein yohL B2 105 REC05285 b2110 yehC E N X Hypothetical fimbrial chaperone yehC precursor B2 106 REC05286 b2111 yehD E N X Hypothetical protein yehD precursor B2 107 REC05309 b2153 folE E N X GTP cyclohydrolase I (EC 3.5.4.16) B2 108 REC02181 b2232 ubiG E N X 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) B2 109 REC05368 b2260 menE E N X O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) B2 110 REC02245 b2296 ackA E N X Acetate kinase (EC 2.7.2.1) B2 111 REC02412 b2472 dapE E N X Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) B2 112 REC05503 b2478 dapA E N X Dihydrodipicolinate synthase (EC 4.2.1.52) B2 113 REC05526 b2526 hscA E N X Chaperone protein hscA B2 114 REC02473 b2533 suhB E N X Inositol-1-monophosphatase (EC 3.1.3.25) B2 115 REC02479 b2539 hcaF E N X 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-) B2 116 REC02480 b2540 hcaC E N X 3-phenylpropionate dioxygenase ferredoxin subunit B2 117 REC05550 b2564 pdxJ E N X Pyridoxal phosphate biosynthetic protein pdxJ B2 118 REC02525 b2585 pssA E N X CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) B2 119 REC05572 b2608 rimM E N X 16S rRNA processing protein rimM B2 120 REC02742 b2811 ygdK E N X Hypothetical protein ygdK B2 121 REC02864 b2942 metK E N X S-adenosylmethionine synthetase (EC 2.5.1.6) B2 122 REC05803 b3033 yqiB E N X Hypothetical protein yqiB B2 123 REC02979 b3056 cca E N X tRNA nucleotidyltransferase (EC 2.7.7.25) B2 124 REC05832 b3112 tdcG E N X L-serine dehydratase tdcG (EC 4.2.1.13) B2 125 REC05857 b3168 infB E N X Translation initiation factor IF-2 B2 126 REC03109 b3187 ispB E N X Octaprenyl-diphosphate synthase (EC 2.5.1.-) B2 127 REC05906 b3250 mreC E N X Rod shape-determining protein mreC B2 128 REC05907 b3251 mreB E N X Rod shape-determining protein mreB B2 129 REC03186 b3261 fis E N X DNA-binding protein fis B2 130 REC03206 b3288 fmt E N X Methionyl-tRNA formyltransferase (EC 2.1.2.9) B2 131 REC03209 b3291 mscL E N X Large-conductance mechanosensitive channel B2 132 REC05953 b3339 tufA E N X Elongation factor Tu B2 133 REC05962 b3349 slyD E N X FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC 5.2.1.8) B2 134 REC05985 b3390 aroK E N X Shikimate kinase I (EC 2.7.1.71) B2 135 REC06010 b3433 asd E N X Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) B2 136 REC06029 b3461 rpoH E N X RNA polymerase sigma-32 factor B2 137 REC03425 b3506 slp E N X Outer membrane protein slp precursor B2 138 REC06099 b3609 secB E N X Protein-export protein secB B2 139 REC03541 b3621 rfaC E N X Lipopolysaccharide heptosyltransferase-1 (EC 2.-.-.-) B2 140 REC06161 b3719 yieL E N X Hypothetical protein yieL B2 141 REC06171 b3729 glmS E N X Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) B2 142 REC03703 b3793 wzyE E N X Putative ECA polymerase B2 143 REC03715 b3809 dapF E N X Diaminopimelate epimerase (EC 5.1.1.7) B2 144 REC03717 b3811 xerC E N X Integrase/recombinase xerC B2 145 REC03741 b3835 ubiB E N X Probable ubiquinone biosynthesis protein ubiB B2 146 REC03755 b3850 hemG E N X Protoporphyrinogen oxidase (EC 1.3.3.4) B2 147 REC06258 b3935 priA E N X Primosomal protein N' B2 148 REC03867 b3973 birA E N X BirA bifunctional protein B2 149 REC06271 b3974 coaA E N X Pantothenate kinase (EC 2.7.1.33) B2 150 REC03870 b3980 tufB E N X Elongation factor Tu B2 151 REC06617 b3997 hemE E N X Uroporphyrinogen decarboxylase (EC 4.1.1.37) B2 152 REC04054 b4171 miaA E N X tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) B2 153 REC04055 b4172 hfq E N X Hfq protein B2 154 REC04084 b4201 priB E N X Primosomal replication protein N B2 155 REC04107 b4224 chpS E N X PemI-like protein 2 B2 156 REC06400 b4259 holC E N X "DNA polymerase III, chi subunit (EC 2.7.7.7)" B2 157 REC06471 b4386 lplA E N X Lipoate-protein ligase A (EC 6.-.-.-) "Set C: genes essential in Gerdes et al., 2002 and unassigned in PEC data (viable gene knockouts from UW data are shownin the sub-set C1)" C1 1 REC04336 b0122 yacC E X N Hypothetical protein yacC precursor C1 2 REC00504 b0521 arcC E X N Carbamate kinase (EC 2.7.2.2) C1 3 REC01282 b1322 ycjF E X N Hypothetical protein ycjF C1 4 REC05026 b1654 ydhD E X N Protein ydhD C1 5 REC05130 b1846 yebE E X N Hypothetical protein yebE C1 6 REC05132 b1848 yebG E X N Hypothetical protein yebG C1 7 REC05142 b1864 yebC E X N Protein yebC C1 8 REC01883 b1929 yedE E X N Hypothetical protein yedE C1 9 REC02869 b2947 gshB E X N Glutathione synthetase (EC 6.3.2.3) C1 10 REC04563 b0636 ybeA E X N Hypothetical protein ybeA C1 11 REC00813 b0846 ybjK E X N Hypothetical protein ybjK C1 12 REC00817 b0850 ybjC E X N Hypothetical protein ybjC C1 13 REC04667 b0865 ybjP E X N Putative lipoprotein ybjP precursor C1 14 REC00833 b0866 ybjQ E X N Hypothetical protein ybjQ C1 15 REC00834 b0867 ybjR E X N Probable N-acetylmuramoyl-L-alanine amidase ybjR (EC 3.5.1.28) C1 16 REC04668 b0868 ybjS E X N Hypothetical protein ybjS C1 17 REC04683 b0897 ycaC E X N Protein ycaC C1 18 REC04706 b0963 mgsA E X N Methylglyoxal synthase (EC 4.2.3.3) C1 19 REC04722 b0999 yccD E X N Hypothetical protein yccD C1 20 REC04730 b1010 ycdK E X N Hypothetical protein ycdK C1 21 REC04731 b1011 ycdL E X N Hypothetical isochorismatase family protein ycdL C1 22 REC01070 b1108 ycfP E X N Hypothetical protein ycfP C1 23 REC04775 b1128 ycfD E X N Hypothetical protein ycfD C1 24 REC01167 b1205 ychH E X N Hypothetical protein ychH C1 25 REC01175 b1213 ychQ E X N Hypothetical protein ychQ C1 26 REC01398 b1438 ydcQ E X N Hypothetical protein ydcQ C1 27 REC01401 b1441 ydcT E X N Hypothetical ABC transporter ATP-binding protein ydcT C1 28 REC01402 b1442 ydcU E X N Hypothetical ABC transporter permease protein ydcU C1 29 REC01403 b1443 ydcV E X N Hypothetical ABC transporter permease protein ydcV C1 30 REC01412 b1452 yncE E X N Hypothetical protein yncE precursor C1 31 REC01423 b1463 nhoA E X N N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) C1 32 REC04966 b1523 yneG E X N Hypothetical protein yneG C1 33 REC04985 b1556 essQ E X N Lysis protein S homolog from lambdoid prophage Qin C1 34 REC01525 b1565 ydfV E X N Hypothetical protein ydfV C1 35 REC04998 b1582 ynfA E X N Hypothetical protein ynfA C1 36 REC01545 b1586 ynfD E X N Hypothetical protein ynfD precursor C1 37 REC01548 b1589 ynfG E X N Probable anaerobic dimethyl sulfoxide reductase chain ynfG C1 38 REC05025 b1648 ydhL E X N Hypothetical protein ydhL precursor C1 39 REC05033 b1671 ydhX E X N Putative ferredoxin-like protein ydhX C1 40 REC05044 b1684 sufA E X N SufA protein C1 41 REC05046 b1686 ydiI E X N Hypothetical protein ydiI C1 42 REC01652 b1695 ydiO E X N Hypothetical protein ydiO C1 43 REC01655 b1698 ydiR E X N Putative electron transfer flavoprotein subunit ydiR C1 44 REC01657 b1700 ydiT E X N Ferredoxin-like protein ydiT C1 45 REC05064 b1722 ydiY E X N Hypothetical protein ydiY precursor C1 46 REC01698 b1741 ydjQ E X N Hypothetical protein ydjQ C1 47 REC05075 b1742 ydjR E X N Hypothetical protein ydjR C1 48 REC05078 b1745 astB E X N Succinylarginine dihydrolase (EC 3.-.-.-) C1 49 REC05080 b1747 astA E X N Arginine N-succinyltransferase (EC 2.3.1.109) C1 50 REC01713 b1756 ynjD E X N Hypothetical ABC transporter ATP-binding protein ynjD C1 51 REC05264 b2073 yegL E X N Hypothetical protein yegL C1 52 REC05455 b2387 ypdH E X N Putative PTS system IIB component ypdH (EC 2.7.1.69) C1 53 REC05479 b2439 eutL E X N Ethanolamine utilization protein eutL C1 54 REC05653 b2780 pyrG E X N CTP synthase (EC 6.3.4.2) C1 55 REC05718 b2900 yqfB E X N Hypothetical protein yqfB C1 56 REC05725 b2909 ygfB E X N Hypothetical protein ygfB C1 57 REC05784 b3002 yqhA E X N Hypothetical protein yqhA C1 58 REC03057 b3133 agaV E X N "PTS system, N-acetylgalactosamine-specific IIB component 2 (EC 2.7.1.69)" C1 59 REC05958 b3344 yheM E X N Hypothetical protein yheM C1 60 REC06278 b3995 rsd E X N Regulator of sigma D C1 61 REC04041 b4155 poxA E X N Putative lysyl-tRNA synthetase (EC 6.1.1.6) C1 62 REC04146 b4262 yjgQ E X N Hypothetical protein yjgQ C1 63 REC06427 b4302 sgcA E X N "Putative phosphotransferase enzyme II, A component sgcA (EC 2.7.1.69)" C2 1 REC05214 b2009 gyrI E X X DNA gyrase inhibitory protein C2 2 REC05888 b3226 yhcK E X X Hypothetical transcriptional regulator yhcK C2 3 REC03603 b3684 yidP E X X Hypothetical transcriptional regulator yidP C2 4 REC06564 b0021 insB1 E X X Insertion element IS1 1/5/6 protein insB C2 5 REC06565 b0022 E X X Insertion element IS1 1/2/3/5/6 protein insA C2 6 REC04307 b0054 imp E X X Organic solvent tolerance protein precursor C2 7 REC00082 b0082 mraW E X X S-adenosyl-methyltransferase mraW (EC 2.1.1.-) C2 8 REC00097 b0097 secM E X X Secretion monitor precursor C2 9 REC04326 b0103 coaE E X X Dephospho-CoA kinase (EC 2.7.1.24) C2 10 REC04338 b0126 yadF E X X Protein yadF C2 11 REC00170 b0170 tsf E X X Elongation factor Ts C2 12 REC00177 b0177 yaeT E X X Unknown protein from 2D-page spots M62/M63/O3/O9/T35 precursor C2 13 REC00204 b0210 yafE E X X Hypothetical protein yafE C2 14 REC04386 b0245 ykfI E X X Hypothetical protein ykfI C2 15 REC06629 b0298 insE1 E X X Transposase insE for insertion sequence IS3A/B/C/D/E/fA/fB C2 16 REC04440 b0357 yaiN E X X Hypothetical protein yaiN C2 17 REC04445 b0364 yaiS E X X Hypothetical protein yaiS C2 18 REC04451 b0379 yaiY E X X Hypothetical protein yaiY C2 19 REC00401 b0417 thiL E X X Thiamine-monophosphate kinase (EC 2.7.4.16) C2 20 REC00426 b0442 ybaV E X X Hypothetical protein ybaV precursor C2 21 REC00439 b0456 ybaA E X X Hypothetical protein ybaA C2 22 REC00451 b0468 ybaN E X X Hypothetical protein ybaN C2 23 REC04492 b0482 ybaP E X X Hypothetical protein ybaP C2 24 REC00466 b0483 ybaQ E X X Hypothetical protein ybaQ C2 25 REC00481 b0498 ybbC E X X Hypothetical protein ybbC precursor C2 26 REC00503 b0520 ylbF E X X Hypothetical protein ylbF C2 27 REC04507 b0524 lpxH E X X "UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-)" C2 28 REC00282 b0540 insE3 E X X Transposase insE for insertion sequence IS3A/B/C/D/E/fA/fB C2 29 REC00529 b0547 ybcN E X X Hypothetical protein ybcN in lambdoid DLP12 prophage region C2 30 REC00531 b0549 ybcO E X X Hypothetical protein ybcO in lambdoid DLP12 prophage region C2 31 REC04518 b0558 ybcV E X X Hypothetical protein ybcV C2 32 REC04554 b0624 crcB E X X Protein crcB C2 33 REC04581 b0659 ybeY E X X Hypothetical protein ybeY C2 34 REC00656 b0682 ybfN E X X Hypothetical lipoprotein ybfN precursor C2 35 REC00784 b0817 mntR E X X Transcriptional regulator mntR C2 36 REC00848 b0881 yljA E X X Protein yljA C2 37 REC00876 b0910 cmk E X X Cytidylate kinase (EC 2.7.4.14) C2 38 REC00881 b0915 lpxK E X X Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) C2 39 REC00892 b0926 ycbK E X X Hypothetical protein ycbK C2 40 REC00931 b0965 yccU E X X Protein yccU C2 41 REC04718 b0987 ymcD E X X Hypothetical protein ymcD C2 42 REC06640 b1027 insE4 E X X Transposase insE for insertion sequence IS3A/B/C/D/E/fA/fB C2 43 REC00995 b1033 ycdW E X X Putative 2-hydroxyacid dehydrogenase ycdW C2 44 REC00996 b1034 ycdX E X X Hypothetical protein ycdX precursor C2 45 REC00998 b1036 ycdZ E X X Hypothetical protein ycdZ C2 46 REC01031 b1069 mviN E X X Virulence factor mviN homolog C2 47 REC01047 b1085 E X X FROM BASES 1137539 TO 1147976 (SECTION 99 OF 400) OF THE COMPLETE GENOME C2 48 REC01105 b1143 ymfI E X X Hypothetical protein ymfI C2 49 REC04788 b1144 ymfJ E X X Hypothetical protein ymfF C2 50 REC04789 b1145 ymfK E X X Putative lambdoid prophage e14 repressor protein C2 C2 51 REC01108 b1146 E X X FROM BASES 1195814 TO 1209543 (SECTION 104 OF 400) OF THE COMPLETE GENOME C2 52 REC04792 b1160 elbA E X X Enhancing lycopene biosynthesis protein 1 C2 53 REC04793 b1161 ycgX E X X Hypothetical protein ycgX C2 54 REC01142 b1180 ycgM E X X Protein ycgM C2 55 REC04811 b1199 ycgS E X X Protein ycgS C2 56 REC04818 b1208 ispE E X X 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) C2 57 REC01190 b1228 E X X FROM BASES 1278800 TO 1289447 (SECTION 111 OF 400) OF THE COMPLETE GENOME C2 58 REC01239 b1279 yciS E X X Hypothetical protein yciS C2 59 REC01359 b1399 paaX E X X Phenylacetic acid degradation operon negative regulatory protein paaX C2 60 REC01360 b1400 paaY E X X Phenylacetic acid degradation protein paaY C2 61 REC04913 b1447 ydcZ E X X Hypothetical protein ydcZ C2 62 REC04914 b1448 yncA E X X Hypothetical acetyltransferase yncA (EC 2.3.1.-) C2 63 REC04925 b1471 yddK E X X Hypothetical protein yddK C2 64 REC04926 b1472 E X X FROM BASES 1540626 TO 1550846 (SECTION 134 OF 400) OF THE COMPLETE GENOME C2 65 REC04935 b1485 yddQ E X X Hypothetical ABC transporter permease protein yddQ C2 66 REC04984 b1555 ydfR E X X Hypothetical protein ydfR C2 67 REC06568 b1578 E X X Transposase insD for insertion element IS2A/D/F/H/I/K C2 68 REC05003 b1599 ydgE E X X Hypothetical protein ydgE C2 69 REC01624 b1667 ydhR E X X Protein ydhR precursor C2 70 REC01681 b1724 ydiZ E X X Hypothetical protein ydiZ C2 71 REC01748 b1791 yeaN E X X Hypothetical transport protein yeaN C2 72 REC01749 b1792 yeaO E X X Hypothetical protein yeaO C2 73 REC05111 b1807 yeaZ E X X Hypothetical protease yeaZ (EC 3.4.-.-) C2 74 REC01766 b1809 yoaB E X X Hypothetical protein yoaB C2 75 REC05126 b1839 yebY E X X Hypothetical protein yebY precursor C2 76 REC01828 b1871 yecP E X X Hypothetical protein yecP C2 77 REC01852 b1895 yecG E X X Hypothetical protein yecG C2 78 REC01928 b1976 yeeI E X X Hypothetical protein yeeI C2 79 REC01953 b2005 yeeV E X X Hypothetical protein yeeV C2 80 REC02028 b2080 yegP E X X Hypothetical protein yegP C2 81 REC06644 b2088 insE5 E X X Transposase insE for insertion sequence IS3A/B/C/D/E/fA/fB C2 82 REC05313 b2161 yeiJ E X X Hypothetical transport protein yeiJ C2 83 REC02112 b2163 yeiL E X X Hypothetical protein yeiL C2 84 REC05315 b2164 yeiM E X X Hypothetical transport protein yeiM C2 85 REC02193 b2244 yfaD E X X Hypothetical protein yfaD C2 86 REC05361 b2246 yfaV E X X Hypothetical transport protein yfaV C2 87 REC05375 b2267 elaA E X X Protein elaA C2 88 REC02253 b2304 yfcH E X X Hypothetical protein yfcH C2 89 REC05448 b2375 yfdX E X X YfdX protein precursor C2 90 REC02384 b2444 yffM E X X Hypothetical protein yffM C2 91 REC02386 b2446 yffO E X X Hypothetical protein yffO C2 92 REC02390 b2450 yffS E X X Hypothetical protein yffS C2 93 REC05487 b2456 eutN E X X Ethanolamine utilization protein eutN C2 94 REC02411 b2471 yffB E X X Protein yffB C2 95 REC05512 b2511 engA E X X Probable GTP-binding protein engA C2 96 REC05525 b2525 fdx E X X "Ferredoxin, 2Fe-2S" C2 97 REC05527 b2527 hscB E X X Chaperone protein hscB C2 98 REC05529 b2529 nifU E X X NifU-like protein C2 99 REC05530 b2530 iscS E X X Cysteine desulfurase (EC 4.4.1.-) C2 100 REC05547 b2559 yfhC E X X Hypothetical protein yfhC C2 101 REC05562 b2579 yfiD E X X Protein yfiD C2 102 REC02522 b2582 trxC E X X Thioredoxin 2 C2 103 REC02548 b2612 E X X Hypothetical protein yfjD C2 104 REC02551 b2615 ppnK E X X Probable inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) C2 105 REC05576 b2618 yfjF E X X Protein yfjF C2 106 REC05577 b2619 yfjG E X X Hypothetical protein yfjG C2 107 REC02580 b2646 ypjF E X X Hypothetical protein ypjF C2 108 REC05589 b2650 ypjC E X X Hypothetical protein ypjC C2 109 REC05591 b2665 ygaU E X X Unknown protein from 2D-page C2 110 REC02601 b2668 ygaP E X X Hypothetical protein ygaP C2 111 REC02606 b2673 nrdH E X X Glutaredoxin-like protein nrdH C2 112 REC02607 b2674 nrdI E X X NrdI protein C2 113 REC05619 b2732 ygbA E X X Hypothetical protein ygbA C2 114 REC02666 b2737 ygbK E X X Hypothetical protein ygbK C2 115 REC05626 b2746 ispF E X X "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)" C2 116 REC05627 b2747 ispD E X X 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) C2 117 REC05628 b2748 ygbQ E X X Hypothetical protein ygbQ C2 118 REC02779 b2854 E X X ORF_O138 C2 119 REC02804 b2880 ygfM E X X Hypothetical protein ygfM C2 120 REC05716 b2897 ygfY E X X Hypothetical protein ygfY C2 121 REC05731 b2923 yggA E X X Hypothetical protein yggA C2 122 REC02870 b2948 yqgE E X X Protein yqgE C2 123 REC02871 b2949 yqgF E X X Hypothetical protein yqgF C2 124 REC05752 b2959 yggL E X X Hypothetical protein yggL C2 125 REC05795 b3021 ygiT E X X Hypothetical protein ygiT C2 126 REC05799 b3027 ygiZ E X X Hypothetical protein ygiZ C2 127 REC03008 b3086 ygjQ E X X Hypothetical protein ygjQ C2 128 REC03020 b3095 yqjA E X X Hypothetical protein yqjA C2 129 REC03021 b3096 yqjB E X X Hypothetical protein yqjB C2 130 REC03025 b3100 yqjK E X X Hypothetical protein yqjK C2 131 REC03058 b3134 agaW E X X "PTS system, N-acetylgalactosamine-specific IIC component 2" C2 132 REC05846 b3152 yraR E X X Hypothetical protein yraR C2 133 REC05847 b3154 yhbP E X X Hypothetical protein yhbP C2 134 REC03079 b3155 yhbQ E X X Hypothetical protein yhbQ C2 135 REC05848 b3156 yhbS E X X Hypothetical acetyltransferase yhbS (EC 2.3.1.-) C2 136 REC05859 b3170 yhbC E X X Hypothetical protein yhbC C2 137 REC03124 b3201 yhbG E X X Probable ABC transporter ATP-binding protein yhbG C2 138 REC03142 b3219 yhcF E X X Hypothetical protein yhcF precursor C2 139 REC05895 b3239 yhcO E X X Hypothetical protein yhcO C2 140 REC05957 b3343 yheL E X X Hypothetical protein yheL C2 141 REC05959 b3345 yheN E X X Hypothetical protein yheN C2 142 REC03292 b3374 yhfQ E X X Hypothetical sugar kinase yhfQ C2 143 REC04294 b3444 E X X Insertion element IS1 1/2/3/5/6 protein insA C2 144 REC03383 b3465 yhhF E X X Putative methylase yhhF (EC 2.1.1.-) C2 145 REC03384 b3466 yhhL E X X Hypothetical protein yhhL C2 146 REC06033 b3467 yhhM E X X Hypothetical protein yhhM C2 147 REC03514 b3594 yibA E X X Hypothetical protein yibA C2 148 REC03516 b3596 yibG E X X Hypothetical protein yibG precursor C2 149 REC06202 b3804 hemD E X X Uroporphyrinogen-III synthase (EC 4.2.1.75) C2 150 REC06578 b3805 hemC E X X Porphobilinogen deaminase (EC 4.3.1.8) C2 151 REC06589 b3833 ubiE E X X Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-) C2 152 REC03826 b3928 yiiU E X X Hypothetical protein yiiU C2 153 REC06279 b4002 zraP E X X Zinc resistance-associated protein precursor C2 154 REC03933 b4047 yjbL E X X Hypothetical protein yjbL C2 155 REC03934 b4048 yjbM E X X Hypothetical protein yjbM C2 156 REC03936 b4050 yjbO E X X Hypothetical protein yjbO C2 157 REC04044 b4158 yjeO E X X Hypothetical protein yjeO C2 158 REC04051 b4168 yjeE E X X Hypothetical protein yjeE C2 159 REC06764 b4215 ytfI E X X Hypothetical protein ytfI C2 160 REC04098 b4215 ytfI E X X Hypothetical protein ytfI C2 161 REC04112 b4229 ytfS E X X Hypothetical ABC transporter ATP-binding protein ytfR C2 162 REC06391 b4243 yjgF E X X Protein yjgF C2 163 REC04134 b4251 yjgJ E X X Hypothetical protein yjgJ C2 164 REC04145 b4261 yjgP E X X Hypothetical protein yjgP C2 165 REC04169 b4286 E X X Very hypothetical 15.1 kDa protein in intB-fecE intergenic region C2 166 REC04260 b4378 yjjV E X X Putative deoxyribonuclease yjjV (EC 3.1.21.-) C2 167 REC06772 yjbS E X X Hypothetical protein yjbS C2 168 REC06714 sgcB E X X "Putative phosphotransferase enzyme II, B component sgcB (EC 2.7.1.69)" "Set D: genes non-essential in Gerdes et al., 2002 but essential in PEC data (viable gene knockouts from UW data are shownin the sub-set D1)" D1 1 REC02410 b2470 acrD N E N Probable aminoglycoside efflux pump D1 2 REC05858 b3169 nusA N* E N N utilization substance protein A D1 3 REC05864 b3178 hflB N E N Cell division protein ftsH (EC 3.4.24.-) D1 4 REC03158 b3235 degS N E N Protease degS precursor (EC 3.4.21.-) D1 5 REC04086 b4203 rplI N E N 50S ribosomal protein L9 D1 6 REC04779 b1132 ycfC N E N Hypothetical protein ycfC D1 7 REC05413 b2319 usg N* E N USG-1 protein D1 8 REC03763 b3863 polA N E N DNA polymerase I (EC 2.7.7.7) D1 9 REC06270 b3965 trmA N E N tRNA (Uracil-5-)-methyltransferase (EC 2.1.1.35) D2 1 REC00086 b0086 murF N E X "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (EC 6.3.2.15)" D2 2 REC00087 b0087 mraY N E X Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) D2 3 REC00178 b0178 hlpA N E X Histone-like protein HLP-1 precursor D2 4 REC04566 b0639 nadD N E* X Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) D2 5 REC04590 b0684 fldA N E X Flavodoxin 1 D2 6 REC00856 b0890 ftsK N* E X Cell division protein ftsK D2 7 REC00857 b0891 lolA N E X Outer-membrane lipoproteins carrier protein precursor D2 8 REC00877 b0911 rpsA N* E X 30S ribosomal protein S1 D2 9 REC01177 b1215 kdsA N* E X 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16) D2 10 REC05410 b2316 accD N* E X Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) D2 11 REC05862 b3176 mrsA N E X Protein mrsA D2 12 REC05865 b3179 rrmJ N E X Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) D2 13 REC05871 b3189 murA N E X UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) D2 14 REC05934 b3308 rplE N E X 50S ribosomal protein L5 D2 15 REC05939 b3313 rplP N E X 50S ribosomal protein L16 D2 16 REC05940 b3314 rpsC N E X 30S ribosomal protein S3 D2 17 REC05941 b3315 rplV N E X 50S ribosomal protein L22 D2 18 REC05955 b3341 rpsG N E X 30S ribosomal protein S7 D2 19 REC06030 b3462 ftsX N E X Cell division protein ftsX D2 20 REC06256 b3933 ftsN N E X Cell division protein ftsN D2 21 REC03866 b3972 murB N E X UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) D2 22 REC03871 b3981 secE N E X Preprotein translocase secE subunit D2 23 REC03872 b3982 nusG N E X Transcription antitermination protein nusG "Set E: genes unassigned in Gerdes et al., 2002 but essential in PEC data " E 1 REC05870 b3186 rplU X E N 50S ribosomal protein L21 E 2 REC06292 b4041 plsB X E N Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) E 3 REC04579 b0657 lnt X E X Apolipoprotein N-acyltransferase (EC 2.3.1.-) E 4 REC01173 b1211 prfA X E X Peptide chain release factor 1 E 5 REC05652 b2779 eno X E X Enolase (EC 4.2.1.11) E 6 REC05814 b3064 gcp X E X Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57) E 7 REC02988 b3065 rpsU X E X 30S ribosomal protein S21 E 8 REC05869 b3185 rpmA X E X 50S ribosomal protein L27 E 9 REC03179 b3255 accB X E X Biotin carboxyl carrier protein of acetyl-CoA carboxylase E 10 REC03180 b3256 accC X E X Biotin carboxylase (EC 6.3.4.14) (A subunit of acetyl-CoA carboxylase (EC 6.4.1.2)) E 11 REC05920 b3294 rplQ X E X 50S ribosomal protein L17 E 12 REC05921 b3295 rpoA X E X DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) E 13 REC05922 b3296 rpsD X E X 30S ribosomal protein S4 E 14 REC05923 b3297 rpsK X E X 30S ribosomal protein S11 E 15 REC06155 b3699 gyrB X E X DNA gyrase subunit B (EC 5.99.1.3) E 16 REC06157 b3701 dnaN X E X "DNA polymerase III, beta chain (EC 2.7.7.7)" E 17 REC06615 b3983 rplK X E X 50S ribosomal protein L11 E 18 REC03874 b3984 rplA X E X 50S ribosomal protein L1 E 19 REC03945 b4059 ssb X E X Single-strand binding protein E 20 REC06366 b4161 yjeQ X E X Hypothetical protein yjeQ "Set F: genes with ambiguous assignments in Gerdes et al., 2002 but essential in PEC data" F 1 REC00096 b0096 lpxC ? E X UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) F 2 REC00179 b0179 lpxD ? E X UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) F 3 REC04678 b0884 infA ? E X Translation initiation factor IF-1 F 4 REC01051 b1089 rpmF ? E X 50S ribosomal protein L32 F 5 REC01056 b1094 acpP ? E X Acyl carrier protein F 6 REC05057 b1713 pheT ? E X Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) F 7 REC05061 b1717 rpmI ? E X 50S ribosomal protein L35 F 8 REC06534 b2891 prfB ? E X Peptide chain release factor 2 F 9 REC05925 b3299 rpmJ ? E X 50S ribosomal protein L36 F 10 REC05928 b3302 rpmD ? E X 50S ribosomal protein L30 F 11 REC05938 b3312 rpmC ? E X 50S ribosomal protein L29 F 12 REC06117 b3636 rpmG ? E X 50S ribosomal protein L33 F 13 REC06118 b3637 rpmB ? E X 50S ribosomal protein L28 F 14 REC03570 b3650 spoT ? E X "Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)" F 15 REC03621 b3703 rpmH ? E X 50S ribosomal protein L34 F 16 REC03622 b3704 rnpA ? E X Ribonuclease P protein component (EC 3.1.26.5) F 17 REC03623 b3705 yidC ? E X 60 kDa inner-membrane protein F 18 REC03692 b3782 rhoL ? E X Very hypothetical rho operon leader peptide F 19 REC03693 b3783 rho ? E X Transcription termination factor rho F 20 REC03834 b3936 rpmE ? E X 50S ribosomal protein L31 F 21 REC04085 b4202 rpsR ? E X 30S ribosomal protein S18